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BIOINFORMATICS ANALYSIS:USE OF BIOMART IN ENSEMBL

A TUTORIAL ON HOW TO USE BIOMART IN ENSEMBL
BIOMART :
In this video I have explained the usage of BIOMART. It is a simplest online tool that permits extraction of information with no programming information or comprehension of the basic database structure.


HOW TO USE A BIOMART:

1. Selection of Database Type 
Following are the databases that can be chosen :
  • Ensembl gene
  • Ensembl variation
  • Ensembl regulation 
  • Vega


2. Selection of Database Species
Data available for all the Species including Ensembl genes,Ensembl variation, Ensembl regulation and Vega.

3. Filtration of Input Data
  • BioMart permits you to confine your question with data that you know, e.g: input a list of IDs, restrict to a region.
  • You can access the filter page by clicking on the "Filters" button located on the left panel.


4.Selection of Attributes
This option permits you to choose your ideal yield; the default yield is
  •  Ensembl Gene ID
  •  Ensembl Transcript ID







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