Skip to main content

BIOINFORMATICS ANALYSIS:USE OF BIOMART IN ENSEMBL

A TUTORIAL ON HOW TO USE BIOMART IN ENSEMBL
BIOMART :
In this video I have explained the usage of BIOMART. It is a simplest online tool that permits extraction of information with no programming information or comprehension of the basic database structure.


HOW TO USE A BIOMART:

1. Selection of Database Type 
Following are the databases that can be chosen :
  • Ensembl gene
  • Ensembl variation
  • Ensembl regulation 
  • Vega


2. Selection of Database Species
Data available for all the Species including Ensembl genes,Ensembl variation, Ensembl regulation and Vega.

3. Filtration of Input Data
  • BioMart permits you to confine your question with data that you know, e.g: input a list of IDs, restrict to a region.
  • You can access the filter page by clicking on the "Filters" button located on the left panel.


4.Selection of Attributes
This option permits you to choose your ideal yield; the default yield is
  •  Ensembl Gene ID
  •  Ensembl Transcript ID







Thank you
Waiting for your valuable response


Comments

Post a Comment

Popular posts from this blog

A Complete Guide for Autodock Vina

 Hello Everyone, In the following video we will explain how to use Autodock Vina for Molecular Docking. The video contains details about Downloading Installation Protein-Ligand Docking Tutorial
Post a Comment
Read more

Downloading sequencing data on windows - SRA Tool kit - Step 1

  This is the first part of the lecture series on analyzing sequencing data. The first step is to configure SRA Tool kit on your operating system. #NGS #Sequencing #SRA #Tool #Configuration
Post a Comment
Read more

PHYLOGENETIC ANALYSIS: ROOTED AND UNROOTED TREES

BASIC GUIDELINE TO UNDERSTAND ROOTED AND UNROOTED TREES IN PHYLOGENETICS   What is a  PHYLOGENETIC TREE? Phylogenetic trees represent hypothesis about the evolutionary relationships among a group of organisms. A phylogenetic tree may be built using morphological (body shape), biochemical, behavioral, or molecular features of species or other groups.In building a tree, we organize species into nested groups based on shared derived traits (traits different from those of the group's ancestor). HOW TO DRAW A PHYLOGENETIC TREE? In a phylogenetic tree, the species of interest are shown at the tips of the tree's branches. The branches themselves connect up in a way that represents the evolutionary history of the species that is, how we think they evolved from a common ancestor through a series of divergence (splitting-in-two) events.For more details watch the video below: THANK YOU
Post a Comment
Read more